species:   Venon
pid:       PID2101
parent:    vna-miR-1-5p
paralog:   
locus:     PDEZ01000134.1:112763-112850
matures:   ['AAACGCUGAUCUCCAAGUUACCU', 'AGAGACGAGGAGCAUGAGUGUUUUC']
srr:       SRR11514760
genome:    /Users/jax/+Genomes/Fungal_genomes/Venon.GCA_002776445.1_ASM277644v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514760.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514760.cram PDEZ01000134.1:112763-112850

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

           *************************                 ***************************        
GCGCUCCAAGCUGAAACGCUGAUCUCCAAGUUACCUAAAAUGUCAAGGCAAGAAGAGAGACGAGGAGCAUGAGUGUUUUCAGGAGCGC
(((((((.....((((((((.((((((..(((.(((....(((....)))...)).).)))..)))).)).))))))))..)))))))
-------------AAACGCUGAUCUCCAAGUUACCU---------------------------------------------------- l=23 a=1 c
-------------------------------------------------------AGAGACGAGGAGCAUGAGUGUUUUC-------- l=25 a=0 c*
-------------AAACGCUGAUCUCCAAGUUACCU---------------------------------------------------- l=23 a=1 ma
-------------------------------------------------------AGAGACGAGGAGCAUGAGUGUUUUC-------- l=25 a=0 ma*

---------------------------------------------------------AGACGAGGAGCAUGAGU-------------- l=17 a=1 
-------------AAACGCUGAUCUCCAAGUUACCU---------------------------------------------------- l=23 a=1 (c,ma)
-------------AAACGCUGAUCUCCAAGUUACCUA--------------------------------------------------- l=24 a=1 

mb-01111
ax-1011011
ku-01
ss-100111101110
fn-011
